@article{buffetbataillon:hal-03659900,
TITLE = {Efficient and Quality-Optimized Metagenomic Pipeline Designed for Taxonomic Classification in Routine Microbiological Clinical Tests},
AUTHOR = {Buffet-Bataillon, Sylvie and Rizk, Guillaume and Cattoir, Vincent and Sassi, Mohamed and Thibault, V. and del Giudice, Jennifer and Gangneux, Jean-Pierre},
URL = {https://hal.archives-ouvertes.fr/hal-03659900},
JOURNAL = {Microorganisms},
PUBLISHER = {MDPI},
VOLUME = {10},
NUMBER = {4},
PAGES = {711},
YEAR = {2022},
MONTH = Mar, DOI = {10.3390/microorganisms10040711},
KEYWORDS = {Bracken ; Kaiju ; Kraken2 ; clinical microbiology ; metagenomics ; microbiome ; mycobiome ; quality assessment ; shotgun ; virome},
PDF = {https://hal.archives-ouvertes.fr/hal-03659900/file/microorganisms-10-00711.pdf},
HAL_ID = {hal-03659900},
HAL_VERSION = {v1},
}
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